I think the top one is pressure, and the bottom one just returns fluid to the pan.
Does it matter?
I don't think either line is under enough pressure to require a hard line, or anything. Attach the top fitting to the top fitting on the cooler, and the bottom fitting to the bottom fitting on the cooler. I don't recall ever spending much time worrying about which direction the fluid was flowing. Maybe I've completely screwed things up/or gotten extremely lucky, though.
Ok, the one that's hotter than the other is the pressure side.......
Glad I could help!
(Honestly, that's how I always check)
By accident I found out that my 700r4 was pressure on top. That's because a fitting came loose one time and shot fluid across my garage and stained the wall. I guess you just take the fittings off and run it. You'll know real fast.